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Online First


Online First articles have been peer reviewed, accepted for publication, published online and indexed by PubMed; they have not yet been assigned to a journal issue. When an article is published in an issue it will be removed from this page.

Online First articles are copy-edited, typeset and approved by the author before publication and we aim to post each article within 3 weeks of acceptance.

Articles appear on this page in reverse chronological order; you may also view by section by clicking on the link at the top of the column to the right.

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Brief communication

    Brief communication: Nationwide online social networking for cardiovascular care in Korea using Facebook
    • Changsun Kim,
    • Bo Seung Kang,
    • Hyuk Joong Choi,
    • Young Joo Lee,
    • Gu Hyun Kang,
    • Wook Jin Choi,
    • In Ho Kwon
    J Am Med Inform Assoc Published Online First: 23 May 2013 doi:10.1136/amiajnl-2012-001465
    Brief communication: Patient–provider communication and trust in relation to use of an online patient portal among diabetes patients: The Diabetes and Aging Study
    • Courtney R Lyles,
    • Urmimala Sarkar,
    • James D Ralston,
    • Nancy Adler,
    • Dean Schillinger,
    • Howard H Moffet,
    • Elbert S Huang,
    • Andrew J Karter
    J Am Med Inform Assoc Published Online First: 15 May 2013 doi:10.1136/amiajnl-2012-001567

Perspective

    Perspective: Let the left hand know what the right is doing: a vision for care coordination and electronic health records
    • Robert S Rudin,
    • David W Bates
    J Am Med Inform Assoc Published Online First: 19 June 2013 doi:10.1136/amiajnl-2013-001737
    Perspective: Imaging-based observational databases for clinical problem solving: the role of informatics
    • Alex A T Bui,
    • William Hsu,
    • Corey Arnold,
    • Suzie El-Saden,
    • Denise R Aberle,
    • Ricky K Taira
    J Am Med Inform Assoc Published Online First: 17 June 2013 doi:10.1136/amiajnl-2012-001340

PostScript

    PostScript: Correspondence: Note on Friedman's ‘what informatics is and isn't’
    • Victor Maojo,
    • Casimir A Kulikowski
    J Am Med Inform Assoc Published Online First: 16 April 2013 doi:10.1136/amiajnl-2013-001807

Research and Applications

    Research and Applications: Using rule-based natural language processing to improve disease normalization in biomedical text
    • Ning Kang,
    • Bharat Singh,
    • Zubair Afzal,
    • Erik M van Mulligen,
    • Jan A Kors
    J Am Med Inform Assoc Published Online First: 6 October 2012 doi:10.1136/amiajnl-2012-001173
    Open Access

Research and applications

    Research and applications: Dynamic contrast-enhanced MRI-based biomarkers of therapeutic response in triple-negative breast cancer
    • Daniel I Golden,
    • Daniel L Rubin,
    • Jafi A Lipson,
    • Melinda L Telli,
    • James M Ford
    J Am Med Inform Assoc Published Online First: 19 June 2013 doi:10.1136/amiajnl-2012-001460
    Research and applications: Finding potentially new multimorbidity patterns of psychiatric and somatic diseases: exploring the use of literature-based discovery in primary care research
    • Rein Vos,
    • Sil Aarts,
    • Erik van Mulligen,
    • Job Metsemakers,
    • Martin P van Boxtel,
    • Frans Verhey,
    • Marjan van den Akker
    J Am Med Inform Assoc Published Online First: 17 June 2013 doi:10.1136/amiajnl-2012-001448
    Research and applications: MilxXplore: a web-based system to explore large imaging datasets
    • P Bourgeat,
    • V Dore,
    • V L Villemagne,
    • C C Rowe,
    • O Salvado,
    • J Fripp
    J Am Med Inform Assoc Published Online First: 17 June 2013 doi:10.1136/amiajnl-2012-001545
    Research and applications: Multiscale segmentation of the skull in MR images for MRI-based attenuation correction of combined MR/PET
    • Xiaofeng Yang,
    • Baowei Fei
    J Am Med Inform Assoc Published Online First: 12 June 2013 doi:10.1136/amiajnl-2012-001544
    Research and applications: Drug repurposing: mining protozoan proteomes for targets of known bioactive compounds
    • Adam Sateriale,
    • Kovi Bessoff,
    • Indra Neil Sarkar,
    • Christopher D Huston
    J Am Med Inform Assoc Published Online First: 11 June 2013 doi:10.1136/amiajnl-2013-001700
    Research and applications: Automated identification of drug and food allergies entered using non-standard terminology
    • Richard H Epstein,
    • Paul St Jacques,
    • Michael Stockin,
    • Brian Rothman,
    • Jesse M Ehrenfeld,
    • Joshua C Denny
    J Am Med Inform Assoc Published Online First: 7 June 2013 doi:10.1136/amiajnl-2013-001756
    Research and applications: Influenza surveillance using electronic health records in the American Indian and Alaska Native population
    • James W Keck,
    • John T Redd,
    • James E Cheek,
    • Larry J Layne,
    • Amy V Groom,
    • Sassa Kitka,
    • Michael G Bruce,
    • Anil Suryaprasad,
    • Nancy L Amerson,
    • Theresa Cullen,
    • Ralph T Bryan,
    • Thomas W Hennessy
    J Am Med Inform Assoc Published Online First: 6 June 2013 doi:10.1136/amiajnl-2012-001591
    Research and applications: The use of open source electronic health records within the federal safety net
    • Jason C Goldwater,
    • Nancy J Kwon,
    • Ashley Nathanson,
    • Alison E Muckle,
    • Alexa Brown,
    • Kerri Cornejo
    J Am Med Inform Assoc Published Online First: 6 June 2013 doi:10.1136/amiajnl-2013-001671
    Research and applications: Imaging informatics for consumer health: towards a radiology patient portal
    • Corey W Arnold,
    • Mary McNamara,
    • Suzie El-Saden,
    • Shawn Chen,
    • Ricky K Taira,
    • Alex A T Bui
    J Am Med Inform Assoc Published Online First: 5 June 2013 doi:10.1136/amiajnl-2012-001457
    Research and applications: Benchmarking health IT among OECD countries: better data for better policy
    • Julia Adler-Milstein,
    • Elettra Ronchi,
    • Genna R Cohen,
    • Laura A Pannella Winn,
    • Ashish K Jha
    J Am Med Inform Assoc Published Online First: 30 May 2013 doi:10.1136/amiajnl-2013-001710
    Research and applications: The safety of electronic prescribing: manifestations, mechanisms, and rates of system-related errors associated with two commercial systems in hospitals
    • Johanna I Westbrook,
    • Melissa T Baysari,
    • Ling Li,
    • Rosemary Burke,
    • Katrina L Richardson,
    • Richard O Day
    J Am Med Inform Assoc Published Online First: 30 May 2013 doi:10.1136/amiajnl-2013-001745
    Open Access
    Research and applications: Impact of an electronic medication management system on hospital doctors’ and nurses’ work: a controlled pre–post, time and motion study
    • Johanna I Westbrook,
    • Ling Li,
    • Andrew Georgiou,
    • Richard Paoloni,
    • John Cullen
    J Am Med Inform Assoc Published Online First: 28 May 2013 doi:10.1136/amiajnl-2012-001414
    Open Access
    Research and applications: Comparing Medline citations using modified N-grams
    • Rao Muhammad Adeel Nawab,
    • Mark Stevenson,
    • Paul Clough
    J Am Med Inform Assoc Published Online First: 28 May 2013 doi:10.1136/amiajnl-2012-001552
    Research and applications: A benchmark comparison of deterministic and probabilistic methods for defining manual review datasets in duplicate records reconciliation
    • Erel Joffe,
    • Michael J Byrne,
    • Phillip Reeder,
    • Jorge R Herskovic,
    • Craig W Johnson,
    • Allison B McCoy,
    • Dean F Sittig,
    • Elmer V Bernstam
    J Am Med Inform Assoc Published Online First: 23 May 2013 doi:10.1136/amiajnl-2013-001744
    Research and applications: Patient-generated secure messages and eVisits on a patient portal: are patients at risk?
    • Frederick North,
    • Sarah J Crane,
    • Robert J Stroebel,
    • Stephen S Cha,
    • Eric S Edell,
    • Sidna M Tulledge-Scheitel
    J Am Med Inform Assoc Published Online First: 23 May 2013 doi:10.1136/amiajnl-2012-001208
    Research and applications: Dictionary construction and identification of possible adverse drug events in Danish clinical narrative text
    • Robert Eriksson,
    • Peter Bjødstrup Jensen,
    • Sune Frankild,
    • Lars Juhl Jensen,
    • Søren Brunak
    J Am Med Inform Assoc Published Online First: 23 May 2013 doi:10.1136/amiajnl-2013-001708
    Open Access
    Research and applications: Understanding differences in electronic health record (EHR) use: linking individual physicians’ perceptions of uncertainty and EHR use patterns in ambulatory care
    • Holly Jordan Lanham,
    • Dean F Sittig,
    • Luci K Leykum,
    • Michael L Parchman,
    • Jacqueline A Pugh,
    • Reuben R McDaniel
    J Am Med Inform Assoc Published Online First: 22 May 2013 doi:10.1136/amiajnl-2012-001377
    Open Access
    Research and applications: Effects of health information exchange adoption on ambulatory testing rates
    • Stephen E Ross,
    • Tiffany A Radcliff,
    • William G LeBlanc,
    • L Miriam Dickinson,
    • Anne M Libby,
    • Donald E Nease, Jr
    J Am Med Inform Assoc Published Online First: 22 May 2013 doi:10.1136/amiajnl-2012-001608
    Research and applications: Toward creation of a cancer drug toxicity knowledge base: automatically extracting cancer drug–side effect relationships from the literature
    • Rong Xu,
    • QuanQiu Wang
    J Am Med Inform Assoc Published Online First: 18 May 2013 doi:10.1136/amiajnl-2012-001584
    Research and applications: A flexible framework for recognizing events, temporal expressions, and temporal relations in clinical text
    • Kirk Roberts,
    • Bryan Rink,
    • Sanda M Harabagiu
    J Am Med Inform Assoc Published Online First: 18 May 2013 doi:10.1136/amiajnl-2013-001619
    Research and applications: Epilepsy and seizure ontology: towards an epilepsy informatics infrastructure for clinical research and patient care
    • Satya S Sahoo,
    • Samden D Lhatoo,
    • Deepak K Gupta,
    • Licong Cui,
    • Meng Zhao,
    • Catherine Jayapandian,
    • Alireza Bozorgi,
    • Guo-Qiang Zhang
    J Am Med Inform Assoc Published Online First: 18 May 2013 doi:10.1136/amiajnl-2013-001696
    Research and applications: A corpus-based approach for automated LOINC mapping
    • Mustafa Fidahussein,
    • Daniel J Vreeman
    J Am Med Inform Assoc Published Online First: 15 May 2013 doi:10.1136/amiajnl-2012-001159
    Research and applications: Improvement in the workflow efficiency of treating non-emergency outpatients by using a WLAN-based real-time location system in a level I trauma center
    • Timo Stübig,
    • Eduardo Suero,
    • Christian Zeckey,
    • William Min,
    • Laura Janzen,
    • Musa Citak,
    • Christian Krettek,
    • Tobias Hüfner,
    • Ralph Gaulke
    J Am Med Inform Assoc Published Online First: 15 May 2013 doi:10.1136/amiajnl-2012-001307
    Research and applications: In-home monitoring of older adults with vision impairment: exploring patients’, caregivers’ and professionals’ views
    • Melanie Frances Larizza,
    • Ingrid Zukerman,
    • Fabian Bohnert,
    • Lucy Busija,
    • Sharon Ann Bentley,
    • R Andrew Russell,
    • Gwyneth Rees
    J Am Med Inform Assoc Published Online First: 15 May 2013 doi:10.1136/amiajnl-2012-001586
    Research and applications: From health search to healthcare: explorations of intention and utilization via query logs and user surveys
    • Ryen W White,
    • Eric Horvitz
    J Am Med Inform Assoc Published Online First: 11 May 2013 doi:10.1136/amiajnl-2012-001473
    Research and applications: Using statistical text classification to identify health information technology incidents
    • Kevin E K Chai,
    • Stephen Anthony,
    • Enrico Coiera,
    • Farah Magrabi
    J Am Med Inform Assoc Published Online First: 10 May 2013 doi:10.1136/amiajnl-2012-001409
    Research and applications: Identifying medical terms in patient-authored text: a crowdsourcing-based approach
    • Diana Lynn MacLean,
    • Jeffrey Heer
    J Am Med Inform Assoc Published Online First: 5 May 2013 doi:10.1136/amiajnl-2012-001110
    Open Access
    Research and applications: Implementation and management of a biomedical observation dictionary in a large healthcare information system
    • Pierre-Yves Vandenbussche,
    • Sylvie Cormont,
    • Christophe André,
    • Christel Daniel,
    • Jean Delahousse,
    • Jean Charlet,
    • Eric Lepage
    J Am Med Inform Assoc Published Online First: 1 May 2013 doi:10.1136/amiajnl-2012-001410
    Research and applications: Combining rules and machine learning for extraction of temporal expressions and events from clinical narratives
    • Aleksandar Kovačević,
    • Azad Dehghan,
    • Michele Filannino,
    • John A Keane,
    • Goran Nenadic
    J Am Med Inform Assoc Published Online First: 20 April 2013 doi:10.1136/amiajnl-2013-001625
    Research and applications: Development and evaluation of an ensemble resource linking medications to their indications
    • Wei-Qi Wei,
    • Robert M Cronin,
    • Hua Xu,
    • Thomas A Lasko,
    • Lisa Bastarache,
    • Joshua C Denny
    J Am Med Inform Assoc Published Online First: 10 April 2013 doi:10.1136/amiajnl-2012-001431
    Research and applications: Eventual situations for timeline extraction from clinical reports
    • Cyril Grouin,
    • Natalia Grabar,
    • Thierry Hamon,
    • Sophie Rosset,
    • Xavier Tannier,
    • Pierre Zweigenbaum
    J Am Med Inform Assoc Published Online First: 9 April 2013 doi:10.1136/amiajnl-2013-001627
    Research and applications: A unified structural/terminological interoperability framework based on LexEVS: application to TRANSFoRm
    • Jean-François Ethier,
    • Olivier Dameron,
    • Vasa Curcin,
    • Mark M McGilchrist,
    • Robert A Verheij,
    • Theodoros N Arvanitis,
    • Adel Taweel,
    • Brendan C Delaney,
    • Anita Burgun
    J Am Med Inform Assoc Published Online First: 9 April 2013 doi:10.1136/amiajnl-2012-001312
    Open Access
    Research and applications: A hybrid system for temporal information extraction from clinical text
    • Buzhou Tang,
    • Yonghui Wu,
    • Min Jiang,
    • Yukun Chen,
    • Joshua C Denny,
    • Hua Xu
    J Am Med Inform Assoc Published Online First: 9 April 2013 doi:10.1136/amiajnl-2013-001635
    Research and applications: Comprehensive temporal information detection from clinical text: medical events, time, and TLINK identification
    • Sunghwan Sohn,
    • Kavishwar B Wagholikar,
    • Dingcheng Li,
    • Siddhartha R Jonnalagadda,
    • Cui Tao,
    • Ravikumar Komandur Elayavilli,
    • Hongfang Liu
    J Am Med Inform Assoc Published Online First: 4 April 2013 doi:10.1136/amiajnl-2013-001622
    Research and applications: Use of a support vector machine for categorizing free-text notes: assessment of accuracy across two institutions
    • Adam Wright,
    • Allison B McCoy,
    • Stanislav Henkin,
    • Abhivyakti Kale,
    • Dean F Sittig
    J Am Med Inform Assoc Published Online First: 30 March 2013 doi:10.1136/amiajnl-2012-001576
    Research and applications: Automatic glaucoma diagnosis through medical imaging informatics
    • Jiang Liu,
    • Zhuo Zhang,
    • Damon Wing Kee Wong,
    • Yanwu Xu,
    • Fengshou Yin,
    • Jun Cheng,
    • Ngan Meng Tan,
    • Chee Keong Kwoh,
    • Dong Xu,
    • Yih Chung Tham,
    • Tin Aung,
    • Tien Yin Wong
    J Am Med Inform Assoc Published Online First: 28 March 2013 doi:10.1136/amiajnl-2012-001336
    Research and applications: Evaluation of generic medical information accessed via mobile phones at the point of care in resource-limited settings
    • Hayley Goldbach,
    • Aileen Y Chang,
    • Andrea Kyer,
    • Dineo Ketshogileng,
    • Lynne Taylor,
    • Amit Chandra,
    • Matthew Dacso,
    • Shiang-Ju Kung,
    • Taatske Rijken,
    • Paul Fontelo,
    • Ryan Littman-Quinn,
    • Anne K Seymour,
    • Carrie L Kovarik
    J Am Med Inform Assoc Published Online First: 27 March 2013 doi:10.1136/amiajnl-2012-001276
    Research and applications: À la Recherche du Temps Perdu: extracting temporal relations from medical text in the 2012 i2b2 NLP challenge
    • Colin Cherry,
    • Xiaodan Zhu,
    • Joel Martin,
    • Berry de Bruijn
    J Am Med Inform Assoc Published Online First: 23 March 2013 doi:10.1136/amiajnl-2013-001624
    Research and applications: An assessment of pharmacists’ readiness for paperless labeling: a national survey
    • Yun-Xian Ho,
    • Qingxia Chen,
    • Hui Nian,
    • Kevin B Johnson
    J Am Med Inform Assoc Published Online First: 23 March 2013 doi:10.1136/amiajnl-2013-001654
    Research and applications: Improving performance of natural language processing part-of-speech tagging on clinical narratives through domain adaptation
    • Jeffrey P Ferraro,
    • Hal Daumé III,
    • Scott L DuVall,
    • Wendy W Chapman,
    • Henk Harkema,
    • Peter J Haug
    J Am Med Inform Assoc Published Online First: 13 March 2013 doi:10.1136/amiajnl-2012-001453
    Research and applications: An end-to-end system to identify temporal relation in discharge summaries: 2012 i2b2 challenge
    • Yan Xu,
    • Yining Wang,
    • Tianren Liu,
    • Junichi Tsujii,
    • Eric I-Chao Chang
    J Am Med Inform Assoc Published Online First: 6 March 2013 doi:10.1136/amiajnl-2012-001607
    Research and applications: Evaluating standard terminologies for encoding allergy information
    • Foster R Goss,
    • Li Zhou,
    • Joseph M Plasek,
    • Carol Broverman,
    • George Robinson,
    • Blackford Middleton,
    • Roberto A Rocha
    J Am Med Inform Assoc Published Online First: 9 February 2013 doi:10.1136/amiajnl-2012-000816
    Research and applications: Applying active learning to supervised word sense disambiguation in MEDLINE
    • Yukun Chen,
    • Hongxin Cao,
    • Qiaozhu Mei,
    • Kai Zheng,
    • Hua Xu
    J Am Med Inform Assoc Published Online First: 30 January 2013 doi:10.1136/amiajnl-2012-001244
    Research and applications: Towards comprehensive syntactic and semantic annotations of the clinical narrative
    • Daniel Albright,
    • Arrick Lanfranchi,
    • Anwen Fredriksen,
    • William F Styler IV,
    • Colin Warner,
    • Jena D Hwang,
    • Jinho D Choi,
    • Dmitriy Dligach,
    • Rodney D Nielsen,
    • James Martin,
    • Wayne Ward,
    • Martha Palmer,
    • Guergana K Savova
    J Am Med Inform Assoc Published Online First: 25 January 2013 doi:10.1136/amiajnl-2012-001317
    Open Access
    Research and applications: A sequence labeling approach to link medications and their attributes in clinical notes and clinical trial announcements for information extraction
    • Qi Li,
    • Haijun Zhai,
    • Louise Deleger,
    • Todd Lingren,
    • Megan Kaiser,
    • Laura Stoutenborough,
    • Imre Solti
    J Am Med Inform Assoc Published Online First: 25 December 2012 doi:10.1136/amiajnl-2012-001487
    Open Access
    Research and applications: Finding falls in ambulatory care clinical documents using statistical text mining
    • James A McCart,
    • Donald J Berndt,
    • Jay Jarman,
    • Dezon K Finch,
    • Stephen L Luther
    J Am Med Inform Assoc Published Online First: 15 December 2012 doi:10.1136/amiajnl-2012-001334
    Research and applications: Longitudinal analysis of pain in patients with metastatic prostate cancer using natural language processing of medical record text
    • Norris H Heintzelman,
    • Robert J Taylor,
    • Lone Simonsen,
    • Roger Lustig,
    • Doug Anderko,
    • Jennifer A Haythornthwaite,
    • Lois C Childs,
    • George Steven Bova
    J Am Med Inform Assoc Published Online First: 9 November 2012 doi:10.1136/amiajnl-2012-001076
    Open Access
    Research and applications: Automatically extracting sentences from Medline citations to support clinicians’ information needs
    • Siddhartha Reddy Jonnalagadda,
    • Guilherme Del Fiol,
    • Richard Medlin,
    • Charlene Weir,
    • Marcelo Fiszman,
    • Javed Mostafa,
    • Hongfang Liu
    J Am Med Inform Assoc Published Online First: 25 October 2012 doi:10.1136/amiajnl-2012-001347
    Research and applications: Knowledge-based biomedical word sense disambiguation: an evaluation and application to clinical document classification
    • Vijay N Garla,
    • Cynthia Brandt
    J Am Med Inform Assoc Published Online First: 16 October 2012 doi:10.1136/amiajnl-2012-001350
    Research and applications: A rule based solution to co-reference resolution in clinical text
    • Ping Chen,
    • David Hinote,
    • Guoqing Chen
    J Am Med Inform Assoc Published Online First: 11 October 2012 doi:10.1136/amiajnl-2011-000770
    Research and applications: Improving image retrieval effectiveness via query expansion using MeSH hierarchical structure
    • Mariano Crespo Azcárate,
    • Jacinto Mata Vázquez,
    • Manuel Maña López
    J Am Med Inform Assoc Published Online First: 5 September 2012 doi:10.1136/amiajnl-2012-000943

Review

    Review: Genetic data and electronic health records: a discussion of ethical, logistical and technological considerations
    • Kimberly Shoenbill,
    • Norman Fost,
    • Umberto Tachinardi,
    • Eneida A Mendonca
    J Am Med Inform Assoc Published Online First: 14 June 2013 doi:10.1136/amiajnl-2013-001694
    Open Access
    Review: The Omaha System: a systematic review of the recent literature
    • Maxim Topaz,
    • Nadya Golfenshtein,
    • Kathryn H Bowles
    J Am Med Inform Assoc Published Online First: 6 June 2013 doi:10.1136/amiajnl-2012-001491
    Review: Views of healthcare professionals to linkage of routinely collected healthcare data: a systematic literature review
    • Y M Hopf,
    • C Bond,
    • J Francis,
    • J Haughney,
    • P J Helms
    J Am Med Inform Assoc Published Online First: 28 May 2013 doi:10.1136/amiajnl-2012-001575
    Review: A systematic review of the literature on the evaluation of handoff tools: implications for research and practice
    • Joanna Abraham,
    • Thomas Kannampallil,
    • Vimla L Patel
    J Am Med Inform Assoc Published Online First: 23 May 2013 doi:10.1136/amiajnl-2012-001351
    Review: Temporal reasoning over clinical text: the state of the art
    • Weiyi Sun,
    • Anna Rumshisky,
    • Ozlem Uzuner
    J Am Med Inform Assoc Published Online First: 15 May 2013 doi:10.1136/amiajnl-2013-001760
    Review: Health information technologies in geriatrics and gerontology: a mixed systematic review
    • Isabelle Vedel,
    • Saeed Akhlaghpour,
    • Isaac Vaghefi,
    • Howard Bergman,
    • Liette Lapointe
    J Am Med Inform Assoc Published Online First: 10 May 2013 doi:10.1136/amiajnl-2013-001705
    Review: Evaluating temporal relations in clinical text: 2012 i2b2 Challenge
    • Weiyi Sun,
    • Anna Rumshisky,
    • Ozlem Uzuner
    J Am Med Inform Assoc Published Online First: 5 April 2013 doi:10.1136/amiajnl-2013-001628

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