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Online First

Online First articles have been peer reviewed, accepted for publication, published online and indexed by PubMed; they have not yet been assigned to a journal issue. When an article is published in an issue it will be removed from this page.

Online First articles are copy-edited, typeset and approved by the author before publication and we aim to post each article within 3 weeks of acceptance.

Articles appear on this page in reverse chronological order; you may also view by section by clicking on the link at the top of the column to the right.

More about Online First, including how to cite >>

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20 June 2013

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Research and applications: Investigating the link between radiologists’ gaze, diagnostic decision, and image content

Georgia Tourassi,
Sophie Voisin,
Vincent Paquit,
Elizabeth Krupinski

J Am Med Inform Assoc Published Online First: 20 June 2013 doi:10.1136/amiajnl-2012-001503

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Research and applications: Understanding the acceptability of a computer decision support system in pediatric primary care

Nerissa S Bauer,
Aaron E Carroll,
Stephen M Downs

J Am Med Inform Assoc Published Online First: 20 June 2013 doi:10.1136/amiajnl-2013-001851

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19 June 2013

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Research and applications: Dynamic contrast-enhanced MRI-based biomarkers of therapeutic response in triple-negative breast cancer

Daniel I Golden,
Daniel L Rubin,
Jafi A Lipson,
Melinda L Telli,
James M Ford

J Am Med Inform Assoc Published Online First: 19 June 2013 doi:10.1136/amiajnl-2012-001460

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Perspective: Let the left hand know what the right is doing: a vision for care coordination and electronic health records

Robert S Rudin,
David W Bates

J Am Med Inform Assoc Published Online First: 19 June 2013 doi:10.1136/amiajnl-2013-001737

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17 June 2013

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Perspective: Imaging-based observational databases for clinical problem solving: the role of informatics

Alex A T Bui,
William Hsu,
Corey Arnold,
Suzie El-Saden,
Denise R Aberle,
Ricky K Taira

J Am Med Inform Assoc Published Online First: 17 June 2013 doi:10.1136/amiajnl-2012-001340

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Research and applications: Finding potentially new multimorbidity patterns of psychiatric and somatic diseases: exploring the use of literature-based discovery in primary care research

Rein Vos,
Sil Aarts,
Erik van Mulligen,
Job Metsemakers,
Martin P van Boxtel,
Frans Verhey,
Marjan van den Akker

J Am Med Inform Assoc Published Online First: 17 June 2013 doi:10.1136/amiajnl-2012-001448

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Research and applications: MilxXplore: a web-based system to explore large imaging datasets

P Bourgeat,
V Dore,
V L Villemagne,
C C Rowe,
O Salvado,
J Fripp

J Am Med Inform Assoc Published Online First: 17 June 2013 doi:10.1136/amiajnl-2012-001545

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14 June 2013

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Review: Genetic data and electronic health records: a discussion of ethical, logistical and technological considerations

Kimberly Shoenbill,
Norman Fost,
Umberto Tachinardi,
Eneida A Mendonca

J Am Med Inform Assoc Published Online First: 14 June 2013 doi:10.1136/amiajnl-2013-001694

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12 June 2013

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Research and applications: Multiscale segmentation of the skull in MR images for MRI-based attenuation correction of combined MR/PET

Xiaofeng Yang,
Baowei Fei

J Am Med Inform Assoc Published Online First: 12 June 2013 doi:10.1136/amiajnl-2012-001544

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11 June 2013

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Research and applications: Drug repurposing: mining protozoan proteomes for targets of known bioactive compounds

Adam Sateriale,
Kovi Bessoff,
Indra Neil Sarkar,
Christopher D Huston

J Am Med Inform Assoc Published Online First: 11 June 2013 doi:10.1136/amiajnl-2013-001700

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7 June 2013

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Research and applications: Automated identification of drug and food allergies entered using non-standard terminology

Richard H Epstein,
Paul St Jacques,
Michael Stockin,
Brian Rothman,
Jesse M Ehrenfeld,
Joshua C Denny

J Am Med Inform Assoc Published Online First: 7 June 2013 doi:10.1136/amiajnl-2013-001756

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6 June 2013

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Research and applications: Influenza surveillance using electronic health records in the American Indian and Alaska Native population

James W Keck,
John T Redd,
James E Cheek,
Larry J Layne,
Amy V Groom,
Sassa Kitka,
Michael G Bruce,
Anil Suryaprasad,
Nancy L Amerson,
Theresa Cullen,
Ralph T Bryan,
Thomas W Hennessy

J Am Med Inform Assoc Published Online First: 6 June 2013 doi:10.1136/amiajnl-2012-001591

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Review: The Omaha System: a systematic review of the recent literature

Maxim Topaz,
Nadya Golfenshtein,
Kathryn H Bowles

J Am Med Inform Assoc Published Online First: 6 June 2013 doi:10.1136/amiajnl-2012-001491

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Research and applications: The use of open source electronic health records within the federal safety net

Jason C Goldwater,
Nancy J Kwon,
Ashley Nathanson,
Alison E Muckle,
Alexa Brown,
Kerri Cornejo

J Am Med Inform Assoc Published Online First: 6 June 2013 doi:10.1136/amiajnl-2013-001671

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5 June 2013

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Research and applications: Imaging informatics for consumer health: towards a radiology patient portal

Corey W Arnold,
Mary McNamara,
Suzie El-Saden,
Shawn Chen,
Ricky K Taira,
Alex A T Bui

J Am Med Inform Assoc Published Online First: 5 June 2013 doi:10.1136/amiajnl-2012-001457

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30 May 2013

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Research and applications: Benchmarking health IT among OECD countries: better data for better policy

Julia Adler-Milstein,
Elettra Ronchi,
Genna R Cohen,
Laura A Pannella Winn,
Ashish K Jha

J Am Med Inform Assoc Published Online First: 30 May 2013 doi:10.1136/amiajnl-2013-001710

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Research and applications: The safety of electronic prescribing: manifestations, mechanisms, and rates of system-related errors associated with two commercial systems in hospitals

Johanna I Westbrook,
Melissa T Baysari,
Ling Li,
Rosemary Burke,
Katrina L Richardson,
Richard O Day

J Am Med Inform Assoc Published Online First: 30 May 2013 doi:10.1136/amiajnl-2013-001745

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28 May 2013

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Research and applications: Impact of an electronic medication management system on hospital doctors’ and nurses’ work: a controlled pre–post, time and motion study

Johanna I Westbrook,
Ling Li,
Andrew Georgiou,
Richard Paoloni,
John Cullen

J Am Med Inform Assoc Published Online First: 28 May 2013 doi:10.1136/amiajnl-2012-001414

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Research and applications: Comparing Medline citations using modified N-grams

Rao Muhammad Adeel Nawab,
Mark Stevenson,
Paul Clough

J Am Med Inform Assoc Published Online First: 28 May 2013 doi:10.1136/amiajnl-2012-001552

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Review: Views of healthcare professionals to linkage of routinely collected healthcare data: a systematic literature review

Y M Hopf,
C Bond,
J Francis,
J Haughney,
P J Helms

J Am Med Inform Assoc Published Online First: 28 May 2013 doi:10.1136/amiajnl-2012-001575

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23 May 2013

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Brief communication: Nationwide online social networking for cardiovascular care in Korea using Facebook

Changsun Kim,
Bo Seung Kang,
Hyuk Joong Choi,
Young Joo Lee,
Gu Hyun Kang,
Wook Jin Choi,
In Ho Kwon

J Am Med Inform Assoc Published Online First: 23 May 2013 doi:10.1136/amiajnl-2012-001465

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Research and applications: A benchmark comparison of deterministic and probabilistic methods for defining manual review datasets in duplicate records reconciliation

Erel Joffe,
Michael J Byrne,
Phillip Reeder,
Jorge R Herskovic,
Craig W Johnson,
Allison B McCoy,
Dean F Sittig,
Elmer V Bernstam

J Am Med Inform Assoc Published Online First: 23 May 2013 doi:10.1136/amiajnl-2013-001744

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Research and applications: Patient-generated secure messages and eVisits on a patient portal: are patients at risk?

Frederick North,
Sarah J Crane,
Robert J Stroebel,
Stephen S Cha,
Eric S Edell,
Sidna M Tulledge-Scheitel

J Am Med Inform Assoc Published Online First: 23 May 2013 doi:10.1136/amiajnl-2012-001208

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Review: A systematic review of the literature on the evaluation of handoff tools: implications for research and practice

Joanna Abraham,
Thomas Kannampallil,
Vimla L Patel

J Am Med Inform Assoc Published Online First: 23 May 2013 doi:10.1136/amiajnl-2012-001351

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Research and applications: Dictionary construction and identification of possible adverse drug events in Danish clinical narrative text

Robert Eriksson,
Peter Bjødstrup Jensen,
Sune Frankild,
Lars Juhl Jensen,
Søren Brunak

J Am Med Inform Assoc Published Online First: 23 May 2013 doi:10.1136/amiajnl-2013-001708

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22 May 2013

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Research and applications: Understanding differences in electronic health record (EHR) use: linking individual physicians’ perceptions of uncertainty and EHR use patterns in ambulatory care

Holly Jordan Lanham,
Dean F Sittig,
Luci K Leykum,
Michael L Parchman,
Jacqueline A Pugh,
Reuben R McDaniel

J Am Med Inform Assoc Published Online First: 22 May 2013 doi:10.1136/amiajnl-2012-001377

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Research and applications: Effects of health information exchange adoption on ambulatory testing rates

Stephen E Ross,
Tiffany A Radcliff,
William G LeBlanc,
L Miriam Dickinson,
Anne M Libby,
Donald E Nease, Jr

J Am Med Inform Assoc Published Online First: 22 May 2013 doi:10.1136/amiajnl-2012-001608

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18 May 2013

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Research and applications: Toward creation of a cancer drug toxicity knowledge base: automatically extracting cancer drug–side effect relationships from the literature

Rong Xu,
QuanQiu Wang

J Am Med Inform Assoc Published Online First: 18 May 2013 doi:10.1136/amiajnl-2012-001584

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Research and applications: A flexible framework for recognizing events, temporal expressions, and temporal relations in clinical text

Kirk Roberts,
Bryan Rink,
Sanda M Harabagiu

J Am Med Inform Assoc Published Online First: 18 May 2013 doi:10.1136/amiajnl-2013-001619

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Research and applications: Epilepsy and seizure ontology: towards an epilepsy informatics infrastructure for clinical research and patient care

Satya S Sahoo,
Samden D Lhatoo,
Deepak K Gupta,
Licong Cui,
Meng Zhao,
Catherine Jayapandian,
Alireza Bozorgi,
Guo-Qiang Zhang

J Am Med Inform Assoc Published Online First: 18 May 2013 doi:10.1136/amiajnl-2013-001696

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15 May 2013

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Research and applications: A corpus-based approach for automated LOINC mapping

Mustafa Fidahussein,
Daniel J Vreeman

J Am Med Inform Assoc Published Online First: 15 May 2013 doi:10.1136/amiajnl-2012-001159

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Research and applications: Improvement in the workflow efficiency of treating non-emergency outpatients by using a WLAN-based real-time location system in a level I trauma center

Timo Stübig,
Eduardo Suero,
Christian Zeckey,
William Min,
Laura Janzen,
Musa Citak,
Christian Krettek,
Tobias Hüfner,
Ralph Gaulke

J Am Med Inform Assoc Published Online First: 15 May 2013 doi:10.1136/amiajnl-2012-001307

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Research and applications: In-home monitoring of older adults with vision impairment: exploring patients’, caregivers’ and professionals’ views

Melanie Frances Larizza,
Ingrid Zukerman,
Fabian Bohnert,
Lucy Busija,
Sharon Ann Bentley,
R Andrew Russell,
Gwyneth Rees

J Am Med Inform Assoc Published Online First: 15 May 2013 doi:10.1136/amiajnl-2012-001586

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Review: Temporal reasoning over clinical text: the state of the art

Weiyi Sun,
Anna Rumshisky,
Ozlem Uzuner

J Am Med Inform Assoc Published Online First: 15 May 2013 doi:10.1136/amiajnl-2013-001760

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Brief communication: Patient–provider communication and trust in relation to use of an online patient portal among diabetes patients: The Diabetes and Aging Study

Courtney R Lyles,
Urmimala Sarkar,
James D Ralston,
Nancy Adler,
Dean Schillinger,
Howard H Moffet,
Elbert S Huang,
Andrew J Karter

J Am Med Inform Assoc Published Online First: 15 May 2013 doi:10.1136/amiajnl-2012-001567

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11 May 2013

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Research and applications: From health search to healthcare: explorations of intention and utilization via query logs and user surveys

Ryen W White,
Eric Horvitz

J Am Med Inform Assoc Published Online First: 11 May 2013 doi:10.1136/amiajnl-2012-001473

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10 May 2013

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Research and applications: Using statistical text classification to identify health information technology incidents

Kevin E K Chai,
Stephen Anthony,
Enrico Coiera,
Farah Magrabi

J Am Med Inform Assoc Published Online First: 10 May 2013 doi:10.1136/amiajnl-2012-001409

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Review: Health information technologies in geriatrics and gerontology: a mixed systematic review

Isabelle Vedel,
Saeed Akhlaghpour,
Isaac Vaghefi,
Howard Bergman,
Liette Lapointe

J Am Med Inform Assoc Published Online First: 10 May 2013 doi:10.1136/amiajnl-2013-001705

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5 May 2013

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Research and applications: Identifying medical terms in patient-authored text: a crowdsourcing-based approach

Diana Lynn MacLean,
Jeffrey Heer

J Am Med Inform Assoc Published Online First: 5 May 2013 doi:10.1136/amiajnl-2012-001110

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1 May 2013

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Research and applications: Implementation and management of a biomedical observation dictionary in a large healthcare information system

Pierre-Yves Vandenbussche,
Sylvie Cormont,
Christophe André,
Christel Daniel,
Jean Delahousse,
Jean Charlet,
Eric Lepage

J Am Med Inform Assoc Published Online First: 1 May 2013 doi:10.1136/amiajnl-2012-001410

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20 April 2013

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Research and applications: Combining rules and machine learning for extraction of temporal expressions and events from clinical narratives

Aleksandar Kovačević,
Azad Dehghan,
Michele Filannino,
John A Keane,
Goran Nenadic

J Am Med Inform Assoc Published Online First: 20 April 2013 doi:10.1136/amiajnl-2013-001625

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16 April 2013

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PostScript: Correspondence: Note on Friedman's ‘what informatics is and isn't’

Victor Maojo,
Casimir A Kulikowski

J Am Med Inform Assoc Published Online First: 16 April 2013 doi:10.1136/amiajnl-2013-001807

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10 April 2013

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Research and applications: Development and evaluation of an ensemble resource linking medications to their indications

Wei-Qi Wei,
Robert M Cronin,
Hua Xu,
Thomas A Lasko,
Lisa Bastarache,
Joshua C Denny

J Am Med Inform Assoc Published Online First: 10 April 2013 doi:10.1136/amiajnl-2012-001431

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9 April 2013

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Research and applications: Eventual situations for timeline extraction from clinical reports

Cyril Grouin,
Natalia Grabar,
Thierry Hamon,
Sophie Rosset,
Xavier Tannier,
Pierre Zweigenbaum

J Am Med Inform Assoc Published Online First: 9 April 2013 doi:10.1136/amiajnl-2013-001627

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Research and applications: A unified structural/terminological interoperability framework based on LexEVS: application to TRANSFoRm

Jean-François Ethier,
Olivier Dameron,
Vasa Curcin,
Mark M McGilchrist,
Robert A Verheij,
Theodoros N Arvanitis,
Adel Taweel,
Brendan C Delaney,
Anita Burgun

J Am Med Inform Assoc Published Online First: 9 April 2013 doi:10.1136/amiajnl-2012-001312

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Research and applications: A hybrid system for temporal information extraction from clinical text

Buzhou Tang,
Yonghui Wu,
Min Jiang,
Yukun Chen,
Joshua C Denny,
Hua Xu

J Am Med Inform Assoc Published Online First: 9 April 2013 doi:10.1136/amiajnl-2013-001635

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5 April 2013

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Review: Evaluating temporal relations in clinical text: 2012 i2b2 Challenge

Weiyi Sun,
Anna Rumshisky,
Ozlem Uzuner

J Am Med Inform Assoc Published Online First: 5 April 2013 doi:10.1136/amiajnl-2013-001628

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4 April 2013

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Research and applications: Comprehensive temporal information detection from clinical text: medical events, time, and TLINK identification

Sunghwan Sohn,
Kavishwar B Wagholikar,
Dingcheng Li,
Siddhartha R Jonnalagadda,
Cui Tao,
Ravikumar Komandur Elayavilli,
Hongfang Liu

J Am Med Inform Assoc Published Online First: 4 April 2013 doi:10.1136/amiajnl-2013-001622

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30 March 2013

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Research and applications: Use of a support vector machine for categorizing free-text notes: assessment of accuracy across two institutions

Adam Wright,
Allison B McCoy,
Stanislav Henkin,
Abhivyakti Kale,
Dean F Sittig

J Am Med Inform Assoc Published Online First: 30 March 2013 doi:10.1136/amiajnl-2012-001576

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28 March 2013

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Research and applications: Automatic glaucoma diagnosis through medical imaging informatics

Jiang Liu,
Zhuo Zhang,
Damon Wing Kee Wong,
Yanwu Xu,
Fengshou Yin,
Jun Cheng,
Ngan Meng Tan,
Chee Keong Kwoh,
Dong Xu,
Yih Chung Tham,
Tin Aung,
Tien Yin Wong

J Am Med Inform Assoc Published Online First: 28 March 2013 doi:10.1136/amiajnl-2012-001336

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27 March 2013

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Research and applications: Evaluation of generic medical information accessed via mobile phones at the point of care in resource-limited settings

Hayley Goldbach,
Aileen Y Chang,
Andrea Kyer,
Dineo Ketshogileng,
Lynne Taylor,
Amit Chandra,
Matthew Dacso,
Shiang-Ju Kung,
Taatske Rijken,
Paul Fontelo,
Ryan Littman-Quinn,
Anne K Seymour,
Carrie L Kovarik

J Am Med Inform Assoc Published Online First: 27 March 2013 doi:10.1136/amiajnl-2012-001276

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23 March 2013

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Research and applications: À la Recherche du Temps Perdu: extracting temporal relations from medical text in the 2012 i2b2 NLP challenge

Colin Cherry,
Xiaodan Zhu,
Joel Martin,
Berry de Bruijn

J Am Med Inform Assoc Published Online First: 23 March 2013 doi:10.1136/amiajnl-2013-001624

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Research and applications: An assessment of pharmacists’ readiness for paperless labeling: a national survey

Yun-Xian Ho,
Qingxia Chen,
Hui Nian,
Kevin B Johnson

J Am Med Inform Assoc Published Online First: 23 March 2013 doi:10.1136/amiajnl-2013-001654

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13 March 2013

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Research and applications: Improving performance of natural language processing part-of-speech tagging on clinical narratives through domain adaptation

Jeffrey P Ferraro,
Hal Daumé III,
Scott L DuVall,
Wendy W Chapman,
Henk Harkema,
Peter J Haug

J Am Med Inform Assoc Published Online First: 13 March 2013 doi:10.1136/amiajnl-2012-001453

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6 March 2013

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Research and applications: An end-to-end system to identify temporal relation in discharge summaries: 2012 i2b2 challenge

Yan Xu,
Yining Wang,
Tianren Liu,
Junichi Tsujii,
Eric I-Chao Chang

J Am Med Inform Assoc Published Online First: 6 March 2013 doi:10.1136/amiajnl-2012-001607

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9 February 2013

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Research and applications: Evaluating standard terminologies for encoding allergy information

Foster R Goss,
Li Zhou,
Joseph M Plasek,
Carol Broverman,
George Robinson,
Blackford Middleton,
Roberto A Rocha

J Am Med Inform Assoc Published Online First: 9 February 2013 doi:10.1136/amiajnl-2012-000816

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30 January 2013

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Research and applications: Applying active learning to supervised word sense disambiguation in MEDLINE

Yukun Chen,
Hongxin Cao,
Qiaozhu Mei,
Kai Zheng,
Hua Xu

J Am Med Inform Assoc Published Online First: 30 January 2013 doi:10.1136/amiajnl-2012-001244

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25 January 2013

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Research and applications: Towards comprehensive syntactic and semantic annotations of the clinical narrative

Daniel Albright,
Arrick Lanfranchi,
Anwen Fredriksen,
William F Styler IV,
Colin Warner,
Jena D Hwang,
Jinho D Choi,
Dmitriy Dligach,
Rodney D Nielsen,
James Martin,
Wayne Ward,
Martha Palmer,
Guergana K Savova

J Am Med Inform Assoc Published Online First: 25 January 2013 doi:10.1136/amiajnl-2012-001317

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25 December 2012

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Research and applications: A sequence labeling approach to link medications and their attributes in clinical notes and clinical trial announcements for information extraction

Qi Li,
Haijun Zhai,
Louise Deleger,
Todd Lingren,
Megan Kaiser,
Laura Stoutenborough,
Imre Solti

J Am Med Inform Assoc Published Online First: 25 December 2012 doi:10.1136/amiajnl-2012-001487

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15 December 2012

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Research and applications: Finding falls in ambulatory care clinical documents using statistical text mining

James A McCart,
Donald J Berndt,
Jay Jarman,
Dezon K Finch,
Stephen L Luther

J Am Med Inform Assoc Published Online First: 15 December 2012 doi:10.1136/amiajnl-2012-001334

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9 November 2012

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Research and applications: Longitudinal analysis of pain in patients with metastatic prostate cancer using natural language processing of medical record text

Norris H Heintzelman,
Robert J Taylor,
Lone Simonsen,
Roger Lustig,
Doug Anderko,
Jennifer A Haythornthwaite,
Lois C Childs,
George Steven Bova

J Am Med Inform Assoc Published Online First: 9 November 2012 doi:10.1136/amiajnl-2012-001076

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25 October 2012

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Research and applications: Automatically extracting sentences from Medline citations to support clinicians’ information needs

Siddhartha Reddy Jonnalagadda,
Guilherme Del Fiol,
Richard Medlin,
Charlene Weir,
Marcelo Fiszman,
Javed Mostafa,
Hongfang Liu

J Am Med Inform Assoc Published Online First: 25 October 2012 doi:10.1136/amiajnl-2012-001347

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16 October 2012

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Research and applications: Knowledge-based biomedical word sense disambiguation: an evaluation and application to clinical document classification

Vijay N Garla,
Cynthia Brandt

J Am Med Inform Assoc Published Online First: 16 October 2012 doi:10.1136/amiajnl-2012-001350

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11 October 2012

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Research and applications: A rule based solution to co-reference resolution in clinical text

Ping Chen,
David Hinote,
Guoqing Chen

J Am Med Inform Assoc Published Online First: 11 October 2012 doi:10.1136/amiajnl-2011-000770

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6 October 2012

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Research and Applications: Using rule-based natural language processing to improve disease normalization in biomedical text

Ning Kang,
Bharat Singh,
Zubair Afzal,
Erik M van Mulligen,
Jan A Kors

J Am Med Inform Assoc Published Online First: 6 October 2012 doi:10.1136/amiajnl-2012-001173

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5 September 2012

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Research and applications: Improving image retrieval effectiveness via query expansion using MeSH hierarchical structure

Mariano Crespo Azcárate,
Jacinto Mata Vázquez,
Manuel Maña López

J Am Med Inform Assoc Published Online First: 5 September 2012 doi:10.1136/amiajnl-2012-000943

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